CBMA

Centro de Biologia Molecular e Ambiental

Centre of Molecular and Environmental Biology

Jorge M. Pacheco
Jorge M. Pacheco
...
253604364
Full Professor
Sustaining Life - Biodiversity and Functional Ecology
Universidade do Minho - Campus de Gualtar, Departamento de Matemática e Aplicações - 4710-057, Braga - Portugal

Current Research & Key Publications

A. Cooperation between individuals in the framework of Evolutionary Game Theory.
B. Global Optimization (directly though not exclusively related with research in quantum systems)
C. Tumor scaling and evolutionary dynamics.
D. Dynamics of Epidemics & other interdisciplinary problems.

 

Climate Policies under Wealth Inequality
Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco, Simon A. Levin
Proceedings of the National Academy of Sciences (USA) 111 (6) (2014) 2212-2216

A bottom-up institutional approach to cooperative governance of risky commons
Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco
Nature Climate Change 3 (2013) 797–801

Fractal cartography of urban areas
Sara Encarnação, Marcos Gaudiano, Francisco C. Santos, José A. Tenedório, Jorge M. Pacheco
Nature Scientific Reports 2 (2012) 527

The emergence of fairness in repeated group interactions
Sven Van Segbroeck, Jorge M. Pacheco, Tom Lenaerts, Francisco C. Santos
Physical Review Letters 108 (2012) 158104

Risk of collective failure provides an escape from the tragedy of the commons
Francisco C. Santos and Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 108 (2011) 10421-10425.

Adaptive contact networks change disease infectiousness and dynamics
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco
PLoS Computational Biology 6(8)(2010) e1000895
Cancer phenotype as the outcome of an evolutionary game between normal and malignant cells
David Dingli, F. A. Chalub, F. C. Santos, S. Van Segbroeck, Jorge M. Pacheco
British Journal of Cancer 101 (2009) 1130–1136

Neutral evolution in paroxysmal nocturnal hemoglobinuria
David Dingli, Lucio Luzzatto, Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 105 (2008) 18496

Social diversity promotes the emergence of cooperation in public goods games
Francisco C. Santos, Marta D. Santos, Jorge M. Pacheco
Nature 454 (2008) 213-216

Chronic Myeloid Leukemia: Origin, Development, Response To Therapy, And Relapse
David Dingli, Arne Traulsen, Jorge M. Pacheco
Clinical Leukemia 2 (2008) 133-139

Acquired hematopoietic stem cell disorders and mammalian size
J. Viana Lopes, Jorge M. Pacheco, David Dingli
Blood 110 (2007) 4120-4122

Depth of response and outcome in multiple myeloma
David Dingli, Jorge M. Pacheco, Grzegorz S. Nowakowski, Shaji Kumar, Angela Dispenzieri, Suzanne Hayman, Martha Lacy, Dennis Gastineau, Morie Gertz
Journal of Clinical Oncology 25 (2007) 4933-4937
Coevolution of strategy and structure in complex networks with dynamical linking
Jorge M. Pacheco, Arne Traulsen, Martin A. Nowak
Physical Review Letters 97 (2006) 258103

Stern-judging : A simple, successful norm which promotes cooperation under indirect reciprocity
Jorge M. Pacheco, F. C. Santos, Fabio A. C. C. Chalub
PLoS Computational Biology 2(12) (2006) e178

Cooperation Prevails when individuals adjust their social ties (open access)
F. C. Santos, Jorge M. Pacheco, Tom Lenaerts
PLoS Computational Biology 2(10) (2006) 1284

Evolutionary Dynamics of Social Dilemmas in Structured Heterogeneous Populations (open access)
Francisco C. Santos, Jorge M. Pacheco, Tom Lenaerts
Proceedings of the National Academy of Sciences (USA) 103 (2006) 3490-3494 (Online 16-Feb-2006)

Scale-Free networks provide a unifying framework for the Emergence of Cooperation
Francisco C. Santos, Jorge M. Pacheco
Physical Review Letters 95 (2005) 098104

Research Projects

 

Multi-Agent Simulations of Global Governance
Stochastic Co-evolution of Signaling and Cooperation

 

Co-evolution and self-organization of cooperation
Modeling Complex Evolutionary Projects
Cultural and Genetic Evolution of Cooperation
ParQuantum: Development of fault-tolerant support libraries of paralel programming, with application to Quantum Physics
Structural and Electronic Properties of Nano-Structures
Physics and Chemistry of Nano-Structures
Non-linear Effects in the Optical Properties of Atomic Clusters
Nearly Broken Symmetry in Condensed Matter

Publications

Damping of nuclear excitations at finite temperature
P. F. Bortignon, R. A. Broglia, G. F. Bertsch, Jorge M. Pacheco
Nucl. Phys. A460 (1986) 149

An algebraic program for the states associated with the U(5) x O(5) x O(3) chain of groups
C. Yannouleas, Jorge M. Pacheco
Computer Physics Communications 52 (1988) 85

Fluctuations in the Shape Transitions of Hot Nuclei
Jorge M. Pacheco , C. Yannouleas and R. A. Broglia
Physical Review Letters 61 (1988) 294

Time dependent Hartree-Fock calculation of the escaping width of the giant monopole resonance in Oxygen 16
Jorge M. Pacheco , E. Maglione and R. A. Broglia
Physical Review C37 (1988) 2257

Algebraic manipulation of the states associated with the U(5) x O(5) x O(3) chain of groups:
Orthonormalization and matrix elements
C. Yannouleas, Jorge M. Pacheco
Computer Physics Communications 54 (1989) 315

Effect of surface fluctuations in the line shape of plasma resonances in small metal clusters
Jorge M. Pacheco, R. A. Broglia
Physical Review Letters 62 (1989) 1400

Microscopic structure of the plasma resonance in charged potassium microclusters
C. Yannouleas, Jorge M. Pacheco and R. A. Broglia
Physical Review B41 (1990) 6088

The intrinsic line width of the plasmon resonances in metal microclusters at very low temperatures: Quantal surface fluctuations
Jorge M. Pacheco , R. A. Broglia, B. R. Mottelson
Z. Phys. D21 (1991) 289

Optical response of metal microclusters: Atomic analog of the giant dipole resonance in nuclei
R. A. Broglia, Jorge M. Pacheco, C. Yannouleas
Physical Review B44 (1991) 5901

A new formulation of the dynamical response of many-electron systems and the photoabsorption
cross section of small metal clusters
Jorge M. Pacheco and W. Ekardt
Z. Phys. D24 (1992) 65

Effects of motional narrowing on the plasmon resonance in small metal clusters
W. E. Ormand, Jorge M. Pacheco, S. Sanguinetti, G. Benedek, R. A. Broglia
Z. Phys. D24 (1992) 401

Microscopic calculation of the van der Waals interaction between small metal clusters
Jorge M. Pacheco , W. Ekardt
Physical Review Letters 68 (1992) 3694

Response of finite many-electron systems beyond the time dependent
local density approximation: Application to small metal clusters
Jorge M. Pacheco , W. Ekardt
Annalen der Physik ( Leipzig) 1 (1992) 254

Photoabsorption cross section of negatively charged alkali metal clusters
Jorge M. Pacheco , W. Ekardt
Physical Review B47 (1993) 6667

The van de Waals Interaction between alkali microclusters
Jorge M. Pacheco , W. Ekardt
Mod. Phys. Lett. B7 (1993) 573

Microscopic description of the plasmon resonance in small deformed metal clusters
M. Bernath, M. E. Spina, Jorge M. Pacheco
Physical Review B49 (1994) 10764

Single-particle and collective degrees of freedom in C60
F. Alasia, R. A. Broglia, Ll. Serra, G. Coló, Jorge M. Pacheco
J. Phys. B: Mol. Opt. Phys. 27 (1994) L643

The reintroduction of the ionic skeleton in the jellium model for metal clusters:
pseudopotential perturbation theory
W. D. Schöne, W. Ekardt, Jorge M. Pacheco
Physical Review B50 (1994) 11079

Microscopic structure of collective charge density oscillations in C60 and C70
M. S. Hansen, Jorge M. Pacheco, G. Onida
Z. Phys. D35 (1995) 149

Response of metal clusters to elastic electron impact
M. Bernath, O. Dragún, M. R. Spinella, H. Massmann, Jorge M. Pacheco
Physical Review A52 (1995) 2173

Effective particle-hole interaction and the optical response of simple metal clusters
W. Ekardt, Jorge M. Pacheco
Physical Review B52 (1995) 16864

Anisotropic effects in the optical spectra of magic metal clusters: the role of ionic structure
W. D. Schöne, W. Ekardt, Jorge M. Pacheco
Z. Phys. D36 (1996) 65

Monolayer metal coverage of fullerenes: The optical response
Jorge M. Pacheco, F. Alasia, H. E. Roman, R. A. Broglia
Z. Phys. D37 (1996) 277

Reintroducing the ionic structure in the jellium model for metal clusters:
pseudopotential perturbation theory
Jorge M. Pacheco, W. Ekardt, W. D. Schöne

Surf. Rev. and Lett. 3 (1996) 313
Microscopic structure of the surface plasmon in fullerenes
Jorge M. Pacheco

Surf. Rev. and Lett. 3 (1996) 753
Role of self-interaction effects in the geometry optimization of small metal clusters
Jorge M. Pacheco , W. Ekardt, W. D. Schöne
Europhys. Lett. 34 (1996) 13

Ab-Initio Pseudopotential Calculation of the Photo-Response of Metal Clusters
Jorge M. Pacheco, José Luís Martins
J. Chem. Phys. 106 (1997) 6039

Plasmons and Excitons in Many-electron systems and the Optical response of Atomic Clusters
Jorge M. Pacheco , W. P. Ekardt
Z. Phys. B103 (1997) 327

First-Principles Determination of the Dispersion Interaction between
Fullerenes and their Inter-Molecular Potential
Jorge M. Pacheco , J. P. Prates Ramalho
Physical Review Letters 79 (1997) 3873

Shape Phase-Transitions in the Absorption Spectra ofAtomic Clusters
Jorge M. Pacheco , W. D. Schöne
Physical Review Letters 79 (1997) 4986

Effects of geometry in elastic scattering and capture of free electrons by C60 molecules
A. N. Ipatov, W. P. Ekardt, Jorge M. Pacheco
J. Phys. B31 (1998) L511-L517

Ionic and Temperature Aspects of the Photoresponse of Metallic Clusters
Jorge M. Pacheco
Czechoslovak Journal of Physics 48 (1998) 749

Reply... "Shape Phase-Transitions in the Absorption Spectra ofAtomic Clusters"
Jorge M. Pacheco, W. D. Schöne
Physical Review Letters 81 (1998) 5703

Phase diagram of C60 from ab-initio intermolecular potential
A. L. Ferreira, Jorge M. Pacheco, J. P. Prates-Ramalho
J. Chem. Phys. 113 (2000) 738

Highly efficient implementation of a Gaussian program to computing total energy of giant molecules
Jorge M. Pacheco, José Luís Martins
Lecture Notes in Computer Science 1981 (2001) 230

Monte Carlo simulations with first-principles energies
Jorge M. Pacheco, José Luís Martins
Density Functional Theory and its Applications to Materials,
V. E. van Doren, K. van Alsenoy, P. Geerlings, Edts.,
AIP Conference Proceedings 571 (2001) 166

Prediction of Liquid C60 from ab-initio intermolecular potential, in Modelling Complex Systems
A. L. Ferreira, Jorge M. Pacheco, J. P. Prates-Ramalho
Sixth Granada Lectures on Computational Physics,
L. Garrido, J. Marro, Edts.
AIP Conference Proceedings 574 (2001) 218

Influence of Exchange-Correlation potential in Density Functional calculations on polarizabilities and absorption spectra of alkali-metal clusters
S. A. J. van Gisbergen, Jorge M. Pacheco, E. J. Baerends
Physical Review A63 (2001) 063201

Structural and electronic properties of C 36
G. K. Gueorguiev, Jorge M. Pacheco
J. Chem. Phys. 114 (2001) 6068

Structural Identification of MetCars
G. K. Gueorguiev, Jorge M. Pacheco
Physical Review Letters 88 (2002) 115504
(selected for Virtual Journal of Nanoscale Science and Technology, 5-11 (2002) )

First-principles study of the possibility of condensed phases of endohedral silicon cage clusters
Jorge M. Pacheco, G. K. Gueorguiev, José Luís Martins
Physical Review B66 (2002) 033401

Silicon and metal nanotemplates: Size and species dependence of structural and electronic properties
G. K. Gueorguiev, Jorge M. Pacheco,
J. Chem. Phys. 119 (2003) 10313-10317

First-principles norm-conserving pseudopotential with explicit incorporation of semicore states
Carlos L. Reis, Jorge M. Pacheco, José Luís Martins,
Physical Review B68 (2003) 155111

Shapes of cagelike metal carbide clusters: First-principles calculations
G. K. Gueorguiev, Jorge M. Pacheco,
Physical Review B68 (Rapid Communications) (2003) 241401

Quantum size effects in the polarizability of carbon fullerenes
G. K. Gueorguiev, Jorge M. Pacheco, David Tomanek,
Physical Review Letters 92 (2004) 215501
(selected for Virtual Journal of Nanoscale Science and Technology, 9-4 (2004) )

Recurrent epidemics in small world networks
J. Verdasca, M. M. Telo da Gama, A. Nunes, N. R. Bernardino, Jorge M. Pacheco, M. C. Gomes
Journal of Theoretical Biology 233 (2005) 553-561

Network dependence of the dilemmas of cooperation
Jorge M. Pacheco, Francisco C. Santos
Science of Complex Networks: from Biology to the Internet and WWW
AIP Conference Proceedings 776 (2005) pp 90-100 (J. F. F. Mendes, Editor)

Scale-Free networks provide a unifying framework for the Emergence of Cooperation
Francisco C. Santos, Jorge M. Pacheco
Physical Review Letters 95 (2005) 098104
(selected for the Virtual Journal of Biological Physics Research 10 (2005) )

Graph topology plays a determinant role in the evolution of cooperation
Francisco C. Santos, João F. Rodrigues, Jorge M. Pacheco
Proceedings of the Royal Society of London B273 (2006) 51-55 (online October 2005)

Epidemics spreading and cooperation dynamics on homogeneous small-world networks
Francisco C. Santos, João F. Rodrigues, Jorge M. Pacheco
Physical Review E 72 (2005) 056128
(selected for the Virtual Journal of Biological Physics Research 10 (2005) )

A new route to the evolution of cooperation
Francisco C. Santos, Jorge M. Pacheco
Journal of Evolutionary Biology 19(3) (2006) 726-733

The Evolution of Norms
Fabio A. C. C. Chalub, Francisco C. Santos, Jorge M. Pacheco
Journal of Theoretical Biology 241(2) (2006) 233-240

Evolutionary Dynamics of Social Dilemmas in Structured Heterogeneous Populations
Francisco C. Santos, Jorge M. Pacheco, Tom Lenaerts
Proceedings of the National Academy of Sciences, USA 103 (2006) 3490-3494

Stochastic dynamics of invasion and fixation
Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco
Physical Review E74 (2006) 011909
(selected for the Virtual Journal of Biological Physics Research 12, 3 (2006) )

Stochasticicy and Evolutionary Stability
Arne Traulsen, Jorge M. Pacheco, Lorens Imhof
Physical Review E74 (2006) 021905
(selected for the Virtual Journal of Biological Physics Research 12, 4 (2006) )

Active linking in evolutionary games
Jorge M. Pacheco, Arne Traulsen, Martin A. Nowak
Journal of Theoretical Biology 243 (2006) 437-443

Stochastic payoff evaluation increases the temperature of selection
Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco
Journal of Theoretical Biology 244 (2006) 349-356

Allometric scaling of the hematopoietic stem cell pool across mammals
David Dingli, Jorge M. Pacheco
PLoS ONE 1 (2006) e2

Cooperation Prevails when individuals adjust their social ties
F. C. Santos, Jorge M. Pacheco, Tom Lenaerts
PLoS Computational Biology 2(10) (2006) 1284

Coevolution of strategy and structure in complex networks with dynamical linking
Jorge M. Pacheco, Arne Traulsen, Martin A. Nowak
Physical Review Letters 97 (2006) 258103
(selected for the Virtual Journal of Biological Physics Research 13, 1 (2007) )

Stern-judging : A simple, successful norm which promotes cooperation under indirect reciprocity
Jorge M. Pacheco, F. C. Santos, Fabio A. C. C. Chalub
PLoS Computational Biology 2(12) (2006) e178

The Emergence of Tumor Metastases
David Dingli, Franziska Michor, Tibor Antal, Jorge M. Pacheco
Cancer Biology & Therapy 6,3 (2007) 522-529

Pairwise Comparison and selection temperature in evolutionary game dynamics
Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco
Journal of Theoretical Biology 246 ( 2007) 522-529

Stochastic dynamics of hematopoietic tumor stem cells
David Dingli, Arne Traulsen, Jorge M. Pacheco
Cell Cycle 6 (4) (2007) 461-466

In vivo and in silico studies on single versus multiple transplants for multiple myeloma
David Dingli, Jorge M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Cancer Science 98 (5) (2007) 734–739

Silicon-metal clusters: Nano-templates for cluster assembled materials
G. K. Gueorguiev, Jorge M. Pacheco, S. Stafström,
Thin Solid Films 515 (2006) 1192-1196

Compartmental Architecture and Dynamics of Hematopoiesis
David Dingli, Arne Traulsen, Jorge M. Pacheco
PLoS ONE 2(4) (2007) e345

Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs
Hisashi Ohtsuki, Martin A. Nowak, Jorge M. Pacheco
Physical Review Letters 98 (2007) 108106
(selected for the Virtual Journal of Biological Physics Research 13, 6 (2007) )

Evolutionary Graph Theory: Breaking the symmetry between interaction and replacement
Hisashi Ohtsuki, Jorge M. Pacheco, Martin A. Nowak
Journal of Theoretical Biology 246 (4) (2007) 681-694

Serum M-spike and transplant outcome in patients with multiple myeloma
David Dingli, Jorge M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Cancer Science 98 (7) (2007) 1035–1040

Evolution of norms in a multi-level selection model of conflict and cooperation
Jorge M. Pacheco, F. C. Santos, Fabio A. C. C. Chalub
Electronic Journal of Theoretical Physics 4 (2007) 157

Ontogenic growth of the haematopoietic stem cell pool in humans
David Dingli, Jorge M. Pacheco,
Proceedings of the Royal Society of London B274 (2007) 2479

Relationship between depth epth of response and outcome in multiple myeloma
David Dingli, Jorge M. Pacheco, Grzegorz S. Nowakowski, Shaji Kumar, Angela Dispenzieri, Suzanne Hayman, Martha Lacy, Dennis Gastineau, Morie Gertz
Journal of Clinical Oncology 25 (2007) 4933-4937

On the origin of multiple mutant clones in paroxysmal nocturnal hemoglobinuria
Arne Traulsen, Jorge M. Pacheco, David Dingli
Stem Cells 25 (2007) 3081-3084

Acquired hematopoietic stem cell disorders and mammalian size
J. Viana Lopes, Jorge M. Pacheco, David Dingli
Blood 110 (2007) 4120-4122

Repeated games and direct reciprocity under active linking
Jorge M. Pacheco, Arne Traulse, Hisashi Ohtsuki, Martin A. Nowak
Journal of Theoretical Biology 250 (2008) 723

A Multi-Level Selection Model for the Emergence of Social Norms
Francisco C. Santos, Fabio A. C. C. Chalub and Jorge M. Pacheco
in Proceedings of the 9th European Conference on Artifical Life 2007, Lisbon, Portugal (ed. Costa et al),
Advances in Artificial Life, Lecture Notes in Computer Science 4648 (2007), 525-534, Springer.

Evolution of cooperation in a population of selfish adaptive agents
Jorge M. Pacheco, Tom Lenaerts and Francisco C. Santos
in Proceedings of the 9th European Conference on Artifical Life 2007, Lisbon, Portugal (ed. Costa et al),
Advances in Artificial Life, Lecture Notes in Computer Science 4648 (2007), 535-544, Springer.

Stability analysis of a bulk material built from silicon cage clusters: A first-principles approach
Carlos L. Reis, José Luís Martins, Jorge M. Pacheco,
Physics Review B76, (2007) 233406

Some dynamic aspects of hematopoietic stem-cells
David Dingli, Jorge M. Pacheco
Stem Cell Reviews and Reports 4 (2008) 57-64

Multiple mutant clones in blood rarely coexist
David Dingli, Jorge M. Pacheco, Arne Traulsen
Physical Review E77 (2008) 021915

Chronic Myeloid Leukemia: Origin, Development, Response To Therapy, And Relapse
David Dingli, Arne Traulsen, Jorge M. Pacheco
Clinical Leukemia 2(2) (2008) 133-139

Dynamics of haemopoiesis across mammals
David Dingli, Arne Traulsen, Jorge M. Pacheco
Proceedings of the Royal Society of London B275 (2008) 2389-2392

Progenitor Cell Self-renewal and Cyclic Neutropenia
David Dingli, Arne Traulsen, Jorge M. Pacheco
Cell Proliferation 42 (2009) 330-339

Social diversity promotes the emergence of cooperation in public goods games
Francisco C. Santos, Marta D. Santos, Jorge M. Pacheco
Nature 454 (2008) 213-216

Evolutionary dynamics of collective action in N-person stag hunt dilemmas
Jorge M. Pacheco , Francisco C. Santos, Max O. Souza, Brian Skyrms
Proceedings of the Royal Society of London B276 (2009) 315

Cyclic neutropenia in mammals
Jorge M. Pacheco, Arne Traulsen, Tibor Antal, David Dingli
American Journal of Hematolgy 83 (2008) 920

The evolution of prompt reaction to adverse ties
Sven Van Segbroeck, Francisco C. Santos, Ann Nowé, Jorge M. Pacheco, Tom Lenaerts
BMC Evolutionary Biology 8 (2008) 287

Neutral evolution in paroxysmal nocturnal hemoglobinuria
David Dingli, Lucio Luzzatto, Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 105 (2008) 18496

Reacting differently to adverse ties promotes cooperation in social networks
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts, Jorge M. Pacheco
Physical Review Letters 102 (2009) 058105
(selected for the Virtual Journal of Biological Physics Research 17, 4 (2009) )

The allometry of chronic myeloid leukemia
Jorge M. Pacheco, Arne Traulsen, David Dingli
Journal of Theoretical Biology 259 (2009) 635-640

Evolution of Cooperation under N-person Snowdrift Games
Max O. Souza, Jorge M. Pacheco, Francisco C. Santos
Journal of Theoretical Biology 260 (2009) 581-588

Cancer phenotype as the outcome of an evolutionary game between normal and malignant cells
David Dingli, F. A. Chalub, F. C. Santos, S. Van Segbroeck, Jorge M. Pacheco
British Journal of Cancer 101 (2009) 1130–1136

In silico evolutionary dynamics of tumor virotherapy
Carlos L. Reis, Jorge M. Pacheco, Matthews K. Ennis, David Dingli
Integrative Biology 2 (2010) 41-45

Reply. . . Evolutionary game theory: lessons and limitations, a cancer perspective
David Dingli, F. A. Chalub, F. C. Santos, S. Van Segbroeck, Jorge M. Pacheco
British Journal of Cancer 101 (2009) 2062-2063

Population structure induces a symmetry breaking favoring the emergence of cooperation
Jorge M. Pacheco, Flávio L. Pinheiro, Francisco C. Santos
PLoS-Computational Biology 5(12) (2009) e1000596

Tyrosine kinase inhibitor therapy can cure chronic myeloid leukemia without hitting leukemic stem cells
Tom Lenaerts, Jorge M. Pacheco, Arne Traulsen, David Dingli
Haematologica 95 (2010) 900-907

Bulk materials made of silicon cage clusters doped with Ti, Zr, or Hf
Carlos L. Reis, Jorge M. Pacheco
J. Physics Condensed Matter 22 (2009) 035501

Hierarchically constrained dynamics and emergence of complex behavior in nano-hybrids
Luís D. Carlos, Jorge M. Pacheco, Rute A. S. Ferreira, António L. L. Videira
SMALL 6 (2010) 386-390

Emergence of cooperation in adaptive social networks with behavioral diversity
S. Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
in Proceedings of the 10th European Conference on Artifical Life, ECAL 2009, Budapest, Hungary
Kampis, G.; Karsai, I.; Szathmary, E. , Eds. (Springer-Verlag, Berlin, Germany,)
Advances in Artificial Life: Darwin Meets von Neumann, Lecture Notes in Computer Science, vol. 5777 (2011) pp.434-441

Cyclic neutropenia in animals
Jorge M. Pacheco, Arne Traulsen, Tibor Antal, David Dingli
American Journal of Hematology 84 (2009) 258

Reproductive fitness advantage of BCR–ABL expressing leukemia cells
Arne Traulsen, Jorge M. Pacheco, David Dingli
Cancer Letters 294 (2010) 43-48

Modelling Hematopoiesis in Health and Disease
Diogo Peixoto, David Dingli, Jorge M. Pacheco
Mathematical and Computer Modelling 53 (2010) 1546-1557

Adaptive contact networks change disease infectiousness and dynamics
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco
PLoS Computational Biology 6 (8) (2010) e1000895

Somatic mutations and the hierarchy of hematopoiesis
Arne Traulsen, Jorge M. Pacheco, Lucio Luzzatto,David Dingli
BioEssays 32 (2010) 1003-1008

Vibrational spectra of silicon cage clusters doped with Ti, Zr, or Hf
Carlos L. Reis, Jorge M. Pacheco
Physical Review B82 (2010) 155440

Modeling the architecture and dynamics of hematopoiesis
David Dingli, Jorge M. Pacheco
Wiley Interdisciplinary Reviews : Systems Biology 2 (2010) 235-244

Evolutionary Dynamics of Chronic Myeloid Leukemia
David Dingli, Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco
Genes and Cancer 1, 4 (2010) 309-315

Coevolution of Cooperation, Response to Adverse Social Ties and Network Structure
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco, Tom Lenaerts
Games 1(3) (2010) 317-337

Selection pressure transforms the nature of social dilemmas in adaptive networks
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
New Journal of Physics 13 (2011) 013007

Co-evolution of pre-play signaling and cooperation
Francisco C. Santos, Jorge M. Pacheco and Brian Skyrms
Journal of Theoretical Biology 274 (1) 30-35 (2011)

Incipient Cognition Solves the Spatial Reciprocity Conundrum of Cooperation
Jeromos Vukov, Francisco C. Santos, Jorge M. Pacheco
PLoS One 6 (2011) e17939

Explaining the in vivo and in vitro differences in leukemia therapy
T. Lenaerts, F. Castagnetti, A. Traulsen, Jorge M. Pacheco, G. Rosti and D. Dingli
Cell Cycle 10 (2011) 1540-1544.

Stochastic dynamics and the evolution of mutations in stem cells
David Dingli and Jorge M. Pacheco
BMC Biology 9 (2011) 41.

Risk of collective failure provides an escape from the tragedy of the commons
Francisco C. Santos and Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 108 (2011) 10421-10425.

Escaping the tragedy of the commons via directed investments
Jeromos Vukov, Francisco C. Santos and Jorge M. Pacheco
Journal of Theoretical Biology 287 (2011) 37-41.

The role of diversity in the evolution of cooperation
Francisco C. Santos, Flávio L. Pinheiro, Tom Lenaerts and Jorge M. Pacheco
Journal of Theoretical Biology (2012, accepted)

Evolutionary Dynamics of Climate Change under Collective-Risk Dilemmas
Francisco C. Santos, Victor V. Vasconcelos, Marta D. Santos, Pedro B. Neves, and Jorge M. Pacheco
M3AS: Mathematical Models and Methods in Applied Sciences (2012, Special Issue on Mathematics and Complexity in Human and Life Sciences)

Dynamics of mutant cells in hierarchical organized tissues
Benjamin Werner, David Dingli, Tom Lenaerts, Jorge M. Pacheco, Arne Traulsen
PLoS-Computational Biology 7 (2011) 10022900

Evolutionary dynamics of collective action when individual fitness derives from group decisions taken in the past
João A. Moreira, Flávio L. Pinheiro, Ana Nunes, Jorge M. Pacheco
Journal of Theoretical Biology 298 (2012) 8–15

From Local to Global Dilemmas in Social Networks
Flávio L. Pinheiro, Jorge M. Pacheco, Francisco C. Santos
PLoS-ONE 7 (2012) e32114

Tracking the Evolution of Cooperation in Complex Networked Populations
Flávio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco
Lecture Notes in Computer Science 7246 (2012) 86

Evolution of social diversity under the distributed prisoner's dilemma
Flávio L. Pinheiro, João A. Moreira, Marta D. Santos, Francisco C. Santos and Jorge M. Pacheco
International Journal of Autonomous and Adaptive Communications Systems (in press).

The emergence of fairness in repeated group interactions
Sven Van Segbroeck, Jorge M. Pacheco, Tom Lenaerts, Francisco C. Santos
Physical Review Letters 108 (2012) 158104

Cognitive strategies take advantage of the cooperative potential of heterogeneous networks
Jeromos Vukov, Francisco C. Santos, Jorge M. Pacheco
New Journal of Physics 14 (2012) 063031

How selection pressure changes the nature of social dilemmas in structured populations
Flávio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco
New Journal of Physics 14 (2012) 073035

Fractal cartography of urban areas
Sara Encarnação, Marcos Gaudiano, Francisco C. Santos, José A. Tenedório, Jorge M. Pacheco
Nature Scientific Reports 2 (2012) 527

Individual memory and the emergence of cooperation
João Moreira, Jeromos Vukov, Cláudia Sousa, Francisco C Santos, André F. Almeida, Marta D Santos, Jorge M. Pacheco
Animal Behaviour 85 (2013) 233–239

Evolution of collective action in adaptive social structures
João A. Moreira, Jorge M. Pachecoand Francisco C. Santos
Nature Scientific Reports 3 (2013) 1521

A bottom-up institutional approach to cooperative governance of risky commons
Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco
Nature Climate Change 3 (2013) 797–801

Urban Dynamics, Fractals and Generalized Entropy
Sara Encarnação, Marcos Gaudiano, Francisco C. Santos, José A. Tenedório, Jorge M. Pacheco
Entropy 15 (2013) 2679-2697

Climate Change Governance, Cooperation and Self-organization
Jorge M. Pacheco, Vítor V. Vasconcelos, Francisco C. Santos
Physics of Life Reviews (2014) (in press)

Climate Policies under Wealth Inequality
Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco, Simon A. Levin
Proceedings of the National Academy of Sciences (USA) 111 (6) (2014) 2212-2216

Origin of Peer Influence in Social Networks
Flávio L. Pinheiro, Marta D. Santos, Francisco C. Santos, Jorge M. Pacheco
Physical Review Letters (2014) (in press)

Role of self-interaction corrections in the photoabsorption cross section of small metal cluster (indexed in ISI)
Jorge M. Pacheco and W. Ekardt,
Proceedings of the NATO conference Physics and Chemistry of finite systems:
From clusters to crystals, ed. by P. Jena, S. N. Khanna and B. K. Rao,
NATO ASI series C, vol. 374 (Kluwer Academic Publishers, 1992)

The optical response of anionic alkali metal clusters
Jorge M. Pacheco , W. Ekardt
"Atomic and Nuclear Clusters" (Springer-Verlag, Berlin, 1995), pag.79
Size dependent plasmons in metal clusters
W. Ekardt, Jorge M. Pacheco and Z. Penzar
Comments in Atomic and Molecular Physics 31 (1995) 291

Towards a First-Principles Determination of the Phase Diagram of C60
Jorge M. Pacheco J. P. Prates Ramalho
Condensed Matter Theories, vol. 13
J. da Providência et al. (Edts.)
Nova Science Publishers (1998)

Emergence of Cooperation in Heterogeneous Structured Populations
F. C. Santos, Jorge M. Pacheco, Tom Lenaerts
Proceedings of the 10th Conference on the Simulation and Synthesis of Living Systems (L. M. Rocha et al., Edts.) MIT Press (2006) 432-437

The coevolution of loyalty and cooperation (publicação indexada no ISI)
S. Van Segbroeck, Francisco C. Santos, Ann Nowé, Tom Lenaerts and Jorge M. Pacheco
Proceedings of the IEEE Congress on Evolutionary Computation (2009) 500-505

Behavioral differences and the evolution of cooperation in adaptive social networks
S. Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
Proceedings of the Benelux Conference on Artificial Intelligence 2009 B-paper No 84 (2009).

Social diversity favors the emergence of cooperative behavior
Francisco C. Santos, Marta D. Santos, Sven Van Segbroeck and Jorge M. Pacheco
Proceedings of the Benelux Conference on Artificial Intelligence 2009 B-paper No 86 (2009).

Darwin and the Somatic Evolution of Cancer
Jorge M. Pacheco, David Dingli
Actas da Academia de Ciências de Lisboa (2010) in press

Minimizing CO2 Emissions in a Computing World
Carlos L. Reis, Jorge M. Pacheco
Fifth International Conference on Software Engineering Advances (ICSEA), 2010, 395 - 399
(DOI:10.1109/ICSEA.2010.67)

Creating metamaterials at the nano-scale
Jorge M. Pacheco, Carlos L. Reis
Actas da Academia de Ciências de Lisboa (2010) in press

Evolutionary dynamics of collective action
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
in Proceedings of the 20th European Conference on Artificial Life, ECAL 2011 (short paper), MIT Press(in press)

Co-evolution of cooperation and pre-play signaling
Francisco C. Santos, Jorge M. Pacheco, Brian Skyrms
in Proceedings of the 20th European Conference on Artificial Life, ECAL 2011 (short paper), MIT Press(in press)

Sistemas Territoriais Complexos – da não linearidade das dinâmicas territoriais à emergência de territórios auto-organizados
Sara A. Encarnacao, Sergio Serafim, Marcos Gaudiano, Francisco C. Santos, Jorge M. Pacheco and Jose A. Tenedorio
in Proceedings of the XII Coloquio Iberico de Geografia (2010).

Collective Evolutionary Dynamics and Spatial Reciprocity under the N-Person Snowdrift Game
Marta D. Santos, Francisco C. Santos and Jorge M. Pacheco,
forthcoming in the Proceedings of BIONETICS 2010, LNICST, Springer.

Evolutionary Dynamics of Cooperation Under the Distributed Prisoner's Dilemma
Flávio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco
forthcoming in the Proceedings of BIONETICS 2010, LNICST, Springer.

Evolving the asymmetry of the Prisoner's dilemma game in adaptive social structures
João Moreira, Jorge M. Pacheco, Francisco C. Santos
forthcoming in the Proceedings of BIONETICS 2010, LNICST, Springer.

Emergence of collective action under coordination dilemmas
Francisco C. Santos, Brian Skyrms, Max O. Souza and Jorge M. Pacheco
forthcoming in Proceedings of the European Conference on Complex Systems 2010.

Frequency-dependent disease spreading
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco
forthcoming in the Proceedings of BIONETICS 2010, LNICST, Springer.

Sistemas Territoriais Complexos – da não linearidade das dinâmicas territoriais à emergência de territórios auto-organizados
Sara A. Encarnacao, Sergio Serafim, Marcos Gaudiano, Francisco C. Santos, Jorge M. Pacheco and Jose A. Tenedorio
in Proceedings of the XII Coloquio Iberico de Geografia (2010).

Creating metamaterials at the nano-scale
Jorge M. Pacheco, Carlos L. Reis
Actas da Academia de Ciências de Lisboa (2010) in press

Evolutionary dynamics of collective action
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
in Proceedings of the 20th European Conference on Artificial Life, ECAL 2011 (short paper), MIT Press(in press)

Co-evolution of cooperation and pre-play signaling
Francisco C. Santos, Jorge M. Pacheco, Brian Skyrms
in Proceedings of the 20th European Conference on Artificial Life, ECAL 2011 (short paper), MIT Press(in press)

Collective Evolutionary Dynamics and Spatial Reciprocity under the N-Person Snowdrift Game
Marta D. Santos, Francisco C. Santos and Jorge M. Pacheco,
forthcoming in the Proceedings of BIONETICS 2010, LNICST, Springer.

Evolutionary Dynamics of Cooperation Under the Distributed Prisoner's Dilemma
Flávio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco
forthcoming in the Proceedings of BIONETICS 2010, LNICST, Springer.

Evolution of social diversity under the distributed prisoners dilemma
Flávio L. Pinheiro, João A. Moreira, Marta D. Santos, Francisco C. Santos, Jorge M. Pacheco
International Journal of Autonomous and Adaptive Communications Systems (in press)

Evolution of Fairness and Conditional Cooperation in Public Goods Dilemmas
Sven Van Segbroeck, Jorge M. Pacheco, Tom Lenaerts, Francisco C. Santos
Proceedings of the European Conference on Complex Systems 2012
Springer Proceedings in Complexity 2014, pp 827-830

Application of the Jellium Model and its Refinements to the Study of the Electronic Properties of Metal Clusters
Walter Ekardt, W.-D. Schöne, Jorge M. Pacheco
W. Ekardt (Edt.)
"Metal Clusters" John Wiley & Sons (1999)

Darwin, Evolution and Cooperation
Jorge M. Pacheco
Advances in Physical Science,
L. D. Carlos, Edt.(U. Aveiro Editora, Portugal, 2005)

Successful Cancer Treatment: Eradication of Cancer Stem Cells
David Dingli, Jorge M. Pacheco
in "Methods of Cancer Diagnosis, Therapy and Prognosis", Vol. 2, 179-191
M. A. Hayat (Editor),
Springer Netherlands (2008)

Some dynamic aspects of hematopoietic stem-cells
David Dingli, Jorge M. Pacheco
Stem Cell Reviews 4 (2008) 57-64

Evolutionary games in self-organizing populations
Arne Traulsen, Francisco C. Santos, Jorge M. Pacheco
in "Adaptive Networks: Theory, Models and Applications"
Thilo Gross & Hiroki Sayama (Edts.)
Springer Series “Understanding Complex Systems”, vol. 51, pp. 253-267
(Springer Berlin / Heidelberg, 2009)

Evolution of Cooperation in Adaptive Social Networks
S. Van Segbroeck, Francisco C. Santos, Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco
in Handbook on Biological Networks
World Scientific Publishing Company, Singapore 2009
Edited by S. Boccaletti, V. Latora, and Y. Moreno

Hematopoietic stem cells and their dynamics
David Dingli, Arne Traulsen, Jorge M. Pacheco
in "Stem Cells: Basics and Applications"
K. D. Deb and S. M. Totey (Edts) (McGraw-Hill, New Delhi, 2009)

Evolutionary dynamics of collective action (publicação indexada no ISI)
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
in The Mathematics of Darwin's Legacy, series on Mathematics and Biosciences in Interaction, Chalub and Rodrigues (eds), p.119, Birkhauser Basel (1st Edition., 2011, Hardcover, ISBN: 978-3-0348-0121-8).

The messianic effect of pathological altruism
Jorge M. Pacheco and Francisco C. Santos
in Pathological Altruism (Barbara Oakley et al eds.), Oxford University Press (in press).

Coordinating towards a common good
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
Book Chapter in Dynamics and Games in Science,
(in Honour of Mauricio Peixoto and David Rand, DYNA2008)
Springer-Verlag, (in press).

Evolutionary Dynamics of Mutations in Hematopoietic Stem Cells and Beyond
David Dingli, Arne Traulsen and Jorge M. Pacheco
Stem Cells and Cancer Stem Cells, Volume 3, Chapter 11 (2012, accepted)(Springer Science)

Playing with risk to save the planet
Francisco C. Santos and Jorge M. Pacheco
book chapter in The Philosophy of Science in a European Perspective series, Vol. 4., New Challenges to Philosophy of Science, edited by Hanne Andersen, Dennis Dieks, Wenceslao J. Gonzalez, Marcel Weber, Gregory Wheeler, Springer, to appear in 2013.

 

 

2014 - Climate Change Governance, Cooperation and Self-organization (Plenary Talk)
International Conference "Dyamics Games and Science III"
Universidade do Porto,

2014 - The Evolution of Quorum Signaling (Department Coloquium, Invited Talk)
Department of Logic and Philosophy of Science
University of California-Irvine, U.S.A.

2014 - The Ecology of Cancer (Department Coloquium, Invited Talk)
Department of Ecology and Evolutionary Biology
University of California-Irvine, U.S.A.

2013 - Cancer Ecology (Invited Talk)
Conference of the Doctoral Programme in Molecular and Environmental Biology
Universidade do Minho, Portugal

2013 – Avoiding Catastrophic Climate Change: The Public Goods Game we cannot afford to lose (Invited Talk)
International Workshop on Biodiversity and Environment: Viability and Dynamic Games Perspectives, Centre de Recherches Mathématiques, Université de Montréal, Canada

2013 – Avoiding Catastrophic Climate Change: The Public Goods Game we cannot afford to lose (Plenary Talk)
International Conference “Dynamic Games and Science”, Mathematics of Planet Earth, Calouste Gulbenkian Foundation, Portugal

2013 – Evolutionary Game Theory & Cancer (Invited Talk)
International Workshop on Game Theory and Cancer, Mt. Washington Conference Center, Baltimore, USA

2013 – Active stem cells in mammalian hematopoiesis (Plenary Talk)
Symposium on Systems Biology and Stem Cells,
Beckman Center of the National Academy of Sciences, Irvine, USA

2013 – Diversity, Adaptation and the Evolution of Cooperation (Invited Talk)
International Conference on Social Dynamics, Beckman Center of the National Academy of Sciences, Irvine, USA

2013 – Stochastic Effects in Hematopoiesis (Invited Talk)
Cooperation and the Evolution of Multicellularity, Advanced Scientific Program at the KAVLI Institute for Theoretical Physics, Santa Barbara USA

2012 – Climate Change : A Collective Risk Dilemma (Plenary Talk)
International Conference “Planet Earth, Dynamics, Games and Science”, Lisboa, Portugal

2012 – If cells play dice, can we gamble our way of out of cancer ? (Plenary Talk)
International Workshop “Dynamical Systems applied to Biology and Natural Sciences”, Lisboa, Portugal

2012 – Role of information transfer in multi-partner choice models of cooperation
International Workshop “Cooperation in Multi-Partner Settings: Biological Markets & Social Dilemmas”, Leiden, Holanda

2011 – Evolutionary dynamics of Climate Change under the Collective Risk Dilemma
International Conference “Game Theory and Society”, Zurich, Switzerland

2011 – Climate change: a risky public goods game (Invited Talk)
Mathematical Methods and Modeling of Biophysical Phenomena, Iguaçu, Brazil

2011 – Epidemiologia em redes complexas (Advanced Lectures Course)
1st Workshop on Game Theory and Evolutionary Dynamics, U. Federal Fluminense, Niteroi, Brazil

2011 – Models of hematopoiesis (PhD Advanced Course)
IMM, Lisbon, Portugal

2010 – Cooperation & trade on Networks of the First Global Age (Invited Talk)
ESF TECT final meeting, Budapest, Hungary

2010 – The math of hematopoiesis (Advanced Course )
BIOMAT IV, Córdoba, Argentina

2010 – Evolutionary dynamics of climate change under the collective risk dilemma (Invited Talk)
BIOMAT 2010, Rio de Janeiro, Brazil

2010 – Adaptive contact networks change disease infectiousness and dynamics (Invited Talk)
BIOMAT 2010, Rio de Janeiro, Brazil

2010 – Creating meta-materials at the nano-scale (MSc Advanced Course )
European Master in Theoretical Chemistry and Computational Modelling , Porto, Portugal

2010 – Apostar no risco para controlar o aquecimento global do planeta (Invited Talk)
Encontros Ciência 2010, FIL, Lisboa, Portugal

2010 – Evolutionary Game Theory of Cooperation (PhD Advanced Course)
Champalimaud Foundation, Lisbon, Portugal

2010 – Modeling (normal and abnormal) hematopoiesis (PhD Advanced Course)
IMM, Lisbon, Portugal

2010 – Evolutionary dynamics of cooperation on adaptive networks (Invited Talk)
Coalitions and Alliances, NimBios, Knoxville, TN, U.S.A.

2009 – Modeling the architecture and dynamics of hematopoiesis (Invited Talk)
"Sainté et systèmes complexes", Centre Jacques Cartier, Lyon, France

2009 – The evolution of group cooperation (Invited Talk)
"The Mathematics of Darwin's Legacy"
Complexo Interdisciplinar, University of Lisbon, Portugal

2009 – Coordinating towards a common good (Invited Talk)
"Fairness and the Commons - Socio-Economic Strategies and Resource Dynamics", Venice, Italy

2009 – Evolutionary dynamics of collective action (Invited Talk)
"Evolution of Cooperation - Models and Theories", Laxenburg, Vienna, Austria

2009 – The complexity of collective action (invited talk)
Science 2009 worskhop (Fundação Calouste Gulbenkian , Lisboa, Portugal)

2009 – Evolutionary Dynamics of Collective Action (invited talk)
Lectures on Aspects of Complexity (Manchester, England)

2009 – Evolutionary Dynamics of Public Goods Games (invited talk)
Statistical Mechanics of Game Theory, Marienhamn, Finland

2009 – Evolutionary Dynamics of Collective Action (invited talk)
SIMBIOS workshop on coalitions and alliances, University of Knoxville, Knoxville, Tennessee, U.S.A.

2008 – “physics of Biologial systems: From genes to societies”, Lisboa, Portugal (invited talk)

2008 – “Evolution in Health and disease”, IGC-Oeiras, Portugal (invited talk)

2008 – “NET-ACE Conference”, London, England (invited talk)

2008 – “13th International Symposium on dynamic games and applications”, Wroclaw, Poland, (invited talk)

2008 – “First Portuguese Forum of Computational Biology”, Oeiras, Portugal (invited talk)

2008 – “Joint International meeting of the American and Brazillian mathematical Societies”, Rio de Janeiro, Brazil (invited talk)

2008 – “workshop on networks, complexity and competition”, Bled, Slovenia (invited talk)

2008 – “Congresso Nacional de Física Estadística”, Salamanca, Spain, (invited talk)

2008 – “Congrès Annuel de la Société Franceise d'Hématologie”, Paris, France (invited talk)

2008 – “Haematopoiesis and its Disorders. Modelling, Experimental and Clinical Approaches”, Paris, France (invited talk)

2007 – Workshop on complex networks, Amares, Portugal (invited talk)

2007 - ECCS 2007, Dresden, Germany (invited talk)

2007 – Workshop on Complexity, University Carlos III, Madrid, Spain (invited talk)

2007 – Network Science-2007, New York, U.S.A. (invited talk)

2007 - Mathematical Methods and Modeling of Biophysical Phenomena, Búzios, Brazil (invited talk)

2006 - Evolutionary Game Dynamics, Banff, Canada (invited talk)

2006 - Mathematics in Biology and Medicine, IGC-Lisbon, Portugal (invited talk)

2005 - Co-Evolution and Self-Organization in Dynamical Networks,Salou, Spain (invited talk)

2005 - Mathematical Methods and Modeling of Biophysical Phenomena, Angra dos Reis, Brazil (invited talk)

2005 - Advances in Physical Sciences, Aveiro, Portugal (chairman, invited talk)

2004 - Science of Complex Networks: from Biology to the Internet and WWW, Aveiro, Portugal (invited talk)

2005 - Materiais 2005 , Universidade de Aveiro, Portugal (invited talk)

2000 - VECPAR-2000 - Vector and Parallel Computing, Porto, Portugal (invited talk)

2000 - Excitations in Finite and Infinite Systems, CECAM-Lyon, France (invited talk)

2000 - EUCO-CC3 - Third European Conference on Computational Chemistry, Budapeste, Hungary
(invited talk)

1999 - Contemporary Aspects of Cluster Physics, Coimbra, Portugal (invited talk)

1999 - Excitations in Finite and Infinite Systems, CECAM-Lyon, France (invited talk)

1999 - Monte Carlo Methods, Coimbra, Portugal (invited talk)

1998 - Theory and Computer Simulation of Materials - Electronic Structure and Optical Properties, Cancún, Mexico (invited talk)

1998 - Physics and Chemistry of Small Clusters, CECAM-Lyon, France (invited talk)

1998 - Parallelization in Computational Physics, Coimbra, Portugal (invited talk)

1998 - IBER98 "III Iberian Joint Meeting on Atomic and Molecular Physics ", Mira, Portugal (chairman)

1997 - NAMITECH Workshop - "The Physics of Nanotubes", Valladolid, Spain (invited talk)

1997 - "EUCO-CC2 - Second European Conference on Computational Chemistry", Lisboa, Portugal (poster)

1997 - Nuclei and Metal Clusters, Praha, Czeck Republic (invited talk)

1996 - Psi K Network Conference on ab-initio calculation of complex processes in materials,
Schwäbisch Gmünd , Germany (invited talk)

1996 - "Correlations in Unconventional Quantum Liquids", Évora, Portugal (organizer and chairman)

1995 - International workshop on metallic clusters, ECT *, Trento, Italy (invited talk)

1994 - ISSPIC 7 - 7th International Symposium on small particles and inorganic clusters, Kobe, Japan (invited talk)

1993 - Second International conference on atomic and nuclear clusters, Santorini, Grécia (invited talk)

1993 - Conference on Many-Body Physics, Coimbra, Portugal (invited talk)

1992 - Dynamical response of the valence gas in simple metal clusters, Varenna, Italy (invited talk)

1991 - 88.Heraeus-Seminar "Nuclear physics concepts in atomic cluster physics, Bad Honeff, Germany (invited talk)

1991 - Physics and Chemistry of finite systems: From clusters to crystals, Richmond, Virginia Commonwealth University, U.S.A. (invited talk)

1988 - Nuclear Structure Workshop, København, Denmark (invited talk)

1988 - I Workshop on Metal Clusters, København, Denmark (invited talk)

OTHER COMMUNICATIONS

2013 – Evolution of Diversity and Cooperation (Advanced Course)
"Luis Santaló" school: Mathematics of Planet Earth - Scientific challenges in a sustainable planet,
Universidad Menéndez Pelayo, Santander, Spain

2013 – Evolutionary Dynamics of Collective Action (Lecture)
Princeton University, Department of Ecology and Evolutionary Biology

2013 – Princeton University, U.S.A.(Seminar)

2012 – Evolutionary Games on Adaptive Networks (Advanced Lectures)
Summer School on Social Structure, U. Göttingen, Germany

2012 – Instituto Gulbenkian de Ciência, Oeiras, Portugal (Seminar)

2012 – Fundação Champalimaud, Lisboa, Portugal Portugal (Seminar)

2012 – Instituto de Medicina Molecular, Lisboa, Portugal (Seminar)

2011 – Instituto Ricardo Jorge, Lisboa, Portugal (Seminar)

2011 –Instituto de Medicina Molecular, Lisboa, Portugal (Seminar)

2011 – Fundação Champalimaud, Lisboa, Portugal (Talk)

2011 – Instituto de Medicina Molecular, Lisboa, Portugal (Talk)

2011 – Universidade do Minho, Braga, Portugal (Seminar)

2011 – Universidade Federal do Rio de Janeiro, Brazil (Seminar)

2010 – ISCVS, Braga Portugal (Seminar)

2010 – Max-Planck-Institute for Complex Systems, Dresden, Germany (Seminar)

2010 – Academia das Ciências de Lisboa, Portugal (Talk)

2010 – Universidade Federal do Rio de Janeiro, Brazil (Seminar)

2009 – Department of Mathematics and Applications, University of Minho, Braga, Portugal (Seminar)

2009 –Complexo Interdisciplinar, University of Lisbon, Portugal (Seminar)

2009 – University of Manchester, Manchester, England (Talk)

2009 – University of Warwick, Warwick, England (Talk)

2009 – Academia das Ciências de Lisboa, Portugal (Talk)

2009 – Universidade Federal do Rio de Janeiro, Brazil (Seminar)

2009 – Universidade Federal Fluminense, Niteroi, Brazil (Seminar)

2009 – Instituto Gulbenkian de Ciência, Oeiras, Portugal (Talk)

2009 – Universidade do Porto, Portugal (Seminar)

2008 – Complexo Interdisciplinar da Universidade de Lisboa, Portugal (Seminar)

2008 – Instituto Gulbenkian de Ciência, Oeiras, Portugal (Talk)

2008 – Program for Evolutionary Dynamics, Harvard, E.U.A. (Talk)

2008 – Mayo Clinic Institute of Molecular Medicine, Rochester, E.U.A. (Talk)

2008 – Instituto de Medicina Molecular, Lisboa, Portugal (Seminar)

2007 – Universidade do Minho, Portugal (Seminar)

2007 – Universidade do Porto, Portugal (Seminar)

2007 – Universidade livre de Bruxelas, Bélgica (Seminar)

2007 – IMPA, Rio de Janeiro, Brazil (Seminar)

2007 – Universidade do Porto, Portugal (Seminar)

2006 – Universidade de Aveiro, Portugal (Seminar)

2005 – Program for Evolutionary Dynamics, Harvard University, U.S.A (Talk)

1998 – Instituto Politécnico de Tomar, Tomar, Portugal (Seminar)

1992 – University of Milão, Italy (Seminar)

1991 – University of Munique, Germany (Seminar)

1991 – University of Milão, Italy (Seminar)

1990 – Intituto Fritz-Haber, Max-Planck Society, Berlim, Germany (Seminar)

1988 – Instituto Niels Bohr, København, Denmark (Seminar)

1982 –Third Meeting of the Portuguese Physical Society, Coimbra, Portugal (Talk)

POSTERS

2011 – Predicting long-term response to Imatinib treatment from initial patient response data
European Society of Hematology International Conference: CML - Biology and Therapy, Estoril, Portugal
2011 – Connecting diagnostic risk scores to individual patient response under Nilotinib therapy (Poster)
16th Congress of the European Hematology Association, London, UK

2010 – The impact of stochastic dynamics on chronic myeloid leukemia and its therapy (Poster)
2nd Swedish Meeting on Mathematics in Biology, Göteborg, Sweden.

2010 – Fitness differences as an explanation for difference between chronic myeloid leukemia therapies (Poster)
9th European Conference on Computational Biology, Gent, Belgium

2010 – Stochastic extinction of leukemic stem cells provides a road to cure chronic myeloid leukemia (Poster)
9th European Conference on Computational Biology, Gent, Belgium

2010 – Dynamics of chronic myeloid leukemia under nilotinib therapy (Poster)
Annual Meeting of the European Hematology Association, Barcelona, Spain

2010 – Stochastic elimination of cancer stem cells in patients with chronic myeloid leukemia (Poster)
Stem cells in biology and disease, ESTOOLS 2010, Calouste Gulbenkin Foundation, Lisbon, Portugal

2010 – Evolutionary dynamics of chronic myeloid leukemia under therapy: a comparison between imatinib and nilotinib treated patients (Poster)
Days of Molecular Medicine, Karolinska Institute, Stockholm, Sweden

2010 – The impact of stochastic dynamics on chronic myeloid leukemia and its therapymath of hematopoiesis (Poster)
Days of Molecular Medicine, Karolinska Institute, Stockholm, Sweden

1996 - ISSPIC 8 - 8th International Symposium on small particles and inorganic clusters, København (poster)
Denmark

1993 - European Research Conference on "Fundamental Aspects of Clusters", Elounda, Grécia (poster)

1992 - Adriatico research conference on clusters and fullerenes, Trieste, Italy (poster)

1990 - ISSPIC 5 - 5th International Symposium on small particles and inorganic clusters, Constanz, Germany (poster)

1990 - Interdisciplinary Workshop on C60, Risø, Denmark (poster)

1987 - 1st Topical Meeting on Giant Resonance Excitation in Heavy-Ion Collisions, Legnaro, Italy (poster)

1987 - International Conference on Nuclear Shapes, Creta, Grécia (poster)

1986 - School E. Majorana, "The response of Nuclei under Extreme conditions, Erice, Italy (poster)

1985 - II La Rabida International Summer School on Theory of Nuclear Structure and Reactions,
La Rabida, Spain (poster)

1985 - Conference on Semiclassical descriptions of atomic and nuclear collisions, København (poster)

Post-Docs & Students

 

Mário Rui Bacelar, Portuguese, MSc thesis
"Structural Optimization of Lithium Clusters in the context of a new Tight Binding Parametrization"

Carlos Loia Reis, Portuguese, MSc thesis
"A New Pseudopotential for Transition Metals with explicit inclusion of Semi-Core states"

Paulo Alexandre Paiva Andrade, Portuguese, MSc thesis
"Structural and Electronic Porperties of Nickel Clusters in a Tight-Binding Formulation"

Flávio P. Pinheiro, MSc thesis
"Effective Game on Networks"

João A. Moreira, MSc thesis
"Evolution of Collective Action under Active Linking Dynamics"

Fernando P. Santos, MSc thesis
"Evolution of Fairness Under N-Person Ultimatum Games"

Gueorgui Kostov Gueorguiev, Bulgarian, PhD thesis
"Structural and Electronic Properties of Organic and Organo-Metallic Clusters"

Francisco C. Santos, Portuguese, Ph.D. Thesis
"Topological Evolution: From Biological to Social Networks"

Sven van Segbroeck, Ph.D. Thesis (VUB, Computer Science, Brussels)
"Complex Dynamics on Adaptive Networks"

Carlos Loia Reis, Ph.D. Thesis (FCUL, Física, U. de Lisboa)
"Ab-initio Design of Bulk Materials Assembled With Silicon Clusters"

Marta Daniela Almeida Santos Ph.D. Thesis (FCUL, Física, U. de Lisboa)
"Evolutionary Dynamics of Collective Action in Structured Populations"

Marcos Gaudiano (Argentina), Post Doc
"concluded"

Jeromos Vukov (Hungria), Post Doc
"concluded"

Pedro Basso Neves (Portugal), Post Doc
"concluded"

Flávio P. Pinheiro (Portugal), PhD
"ongoing"

Vítor V. Vasconcelos (Portugal), PhD
"ongoing"

Fernando P. Santos (Portugal), PhD
"ongoing"

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